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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8869602_8869705_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8869602 - 8869705
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTCTCTTTAAAG
Flanking Amino Acid:
AARVQQAESEISDIETRIAA
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.1
0.61
1
78
28.2
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
64.6
0.32
1.5
63.96
44.2

Associated Gene:

Gene:
MLPH
Ensembl Gene ID:
ENSAPLG00000005150
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035667
8868425 - 8886302
17878
ENSAPLT00000021982
8868425 - 8886302
17878
ENSAPLT00000005352
8868425 - 8886302
17878
ENSAPLT00000038745
8868425 - 8886302
17878