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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8871102_8872950_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8871102 - 8872950
Intron Length:
1849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCCAT
5'SS Class:
major
3'SS Sequence:
TGGGCTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
TCGCCCTCCATT
Flanking Amino Acid:
SDDMASEARKRSSAQALSEI
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
66.8
40.2
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
75.7
0.58
1
69.1
41.8
Minor 5ss
34.2
-1.8
3.2
47.3
48.1
Minor BPS
47.9
-0
2
65.27
45.6

Associated Gene:

Gene:
MLPH
Ensembl Gene ID:
ENSAPLG00000005150
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038745
8868425 - 8886302
17878
ENSAPLT00000021982
8868425 - 8886302
17878
ENSAPLT00000005352
8868425 - 8886302
17878