Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8879008_8879888_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8879008 - 8879888

Intron Length:

881

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGTGTGGG

5'SS Class:

strong_major

3'SS Sequence:

CTCCAAAAGGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

TTGTACTGAAGC

Flanking Amino Acid:

RSLERNTKPGSPWGEQPRSP

Intron Amino Acid Position:

312

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

0.9

64.9

41.2

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

53.2

0.07

1.1

47.8

38.2

Minor 5ss

32.7

-2

3.1

40.1

Minor BPS

53.1

0.08

68.32

42.9

Associated Gene:

Gene:

MLPH

Ensembl Gene ID:

ENSAPLG00000005150

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021982

8868425 - 8886302

17878

ENSAPLT00000005352

8868425 - 8886302

17878