Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8882025_8883781_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8882025 - 8883781

Intron Length:

1757

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGGAAGC

5'SS Class:

major

3'SS Sequence:

GTGCCGGCGGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGGTGAA

U12 Branch Point Sequence:

TCCAGGTGAATG

Flanking Amino Acid:

EHRDDTPETSGIGDDSDDED

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

1.1

60.8

44.4

Major BPS

49.2

-0

1.3

40.8

41.4

Major PPT

52.8

0.06

1.1

46.3

41.5

Minor 5ss

-2.1

3.2

34.7

41.5

Minor BPS

37.7

-1

2.3

40.06

44.3

Associated Gene:

Gene:

MLPH

Ensembl Gene ID:

ENSAPLG00000005150

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021982

8868425 - 8886302

17878