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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8903981_8909403_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8903981 - 8909403

Intron Length:

5423

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACAG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTTTTAAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTTTTTTAAAG

Flanking Amino Acid:

LCSVGAQQQAAQESADLIFL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.9

71.6

40.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

83.5

0.75

0.9

85.6

26.4

Minor 5ss

31.3

-2.1

3.1

38.3

46.6

Minor BPS

65.7

0.35

1.5

67.62

40.4

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033606

8903831 - 8952929

49099