Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8903981_8914112_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8903981 - 8914112

Intron Length:

10132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACAG

5'SS Class:

strong_major

3'SS Sequence:

TCATTACTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTATAT

U12 Branch Point Sequence:

GTATCATTACTT

Flanking Amino Acid:

LCSVGAQQQAVIEVNKKDIV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.9

71.6

40.1

Major BPS

70.4

0.51

67.1

39.4

Major PPT

80.1

0.68

0.9

35.4

Minor 5ss

31.3

-2.1

3.1

38.3

46.6

Minor BPS

56.2

0.27

1.9

74.98

41.6

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040566

8903831 - 8952929

49099