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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8905419_8909403_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8905419 - 8909403

Intron Length:

3985

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGGCC

5'SS Class:

major

3'SS Sequence:

TCTTTTTTTAAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTTTTTTAAAG

Flanking Amino Acid:

GAKGLVKDITAQESADLIFL

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

69.1

37.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

83.5

0.75

0.9

85.6

26.4

Minor 5ss

30.6

-2.2

3.5

42.3

44.6

Minor BPS

65.7

0.35

1.5

67.62

40.4

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000026823

8903831 - 8952929

49099