About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8918130_8919401_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8918130 - 8919401
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
GAATTTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTTGTGAATT
Flanking Amino Acid:
GVEEVPLAPTESKKDILFLI
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
100
1.24
0.5
100
0
Major PPT
68.7
0.42
1
59.7
45.5
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
48.8
-0
2.1
69.18
42.2

Associated Gene:

Gene:
COL6A3
Ensembl Gene ID:
ENSAPLG00000005511
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005838
8903831 - 8952929
49099
ENSAPLT00000034921
8903831 - 9126576
222746
ENSAPLT00000033606
8903831 - 8952929
49099
ENSAPLT00000026823
8903831 - 8952929
49099