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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8919969_8923504_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8919969 - 8923504

Intron Length:

3536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGGGA

5'SS Class:

major

3'SS Sequence:

TTGTCTCAAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

CTTCCCTTACTT

Flanking Amino Acid:

LLKTIQLQPTVVERGEKKDV

Intron Amino Acid Position:

1027

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.46

1.1

57.5

41.7

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

70.7

0.47

66.9

38.4

Minor 5ss

26.9

-2.7

3.7

38.1

46.8

Minor BPS

66.6

0.6

1.6

81.08

41.1

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746