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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8924126_8925287_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8924126 - 8925287

Intron Length:

1162

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTCCGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

CATCCTCTGACT

Flanking Amino Acid:

PDLVFTSPSPAGVKRDVVFM

Intron Amino Acid Position:

1234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.9

33.7

Major BPS

69.1

0.47

60.7

37.6

Major PPT

87.5

0.84

0.6

84.2

23.7

Minor 5ss

27.4

-2.6

2.7

31.6

42.2

Minor BPS

52.9

0.17

1.7

70.31

40.6

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099