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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8925888_8926456_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8925888 - 8926456
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ACACAAATAACT
Flanking Amino Acid:
QLLGDVTTTVEVSGEEKDIV
Intron Amino Acid Position:
1434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
61.3
0.28
1
62
30.6
Major PPT
82.3
0.73
0.7
78.1
23.9
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
44.2
-0.3
2
60.7
41.7

Associated Gene:

Gene:
COL6A3
Ensembl Gene ID:
ENSAPLG00000005511
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034921
8903831 - 9126576
222746
ENSAPLT00000033606
8903831 - 8952929
49099
ENSAPLT00000026823
8903831 - 8952929
49099
ENSAPLT00000040566
8903831 - 8952929
49099
ENSAPLT00000005838
8903831 - 8952929
49099
ENSAPLT00000036619
8903831 - 8952929
49099