Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8927060_8927471_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8927060 - 8927471

Intron Length:

412

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGACTG

5'SS Class:

strong_major

3'SS Sequence:

ATTTATTTTTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TTTTCTTTATAT

Flanking Amino Acid:

TTEPPGPVGTVGKKQADIVF

Intron Amino Acid Position:

1635

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

68.2

42.8

Major BPS

88.7

0.96

0.8

36.5

Major PPT

76.2

0.59

1.1

36.9

Minor 5ss

35.7

-1.6

3.2

45.4

43.6

Minor BPS

70.9

0.73

1.6

89.12

35.5

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099