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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8928985_8929373_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8928985 - 8929373

Intron Length:

389

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATAAAT

U12 Branch Point Sequence:

CTGACATAAATT

Flanking Amino Acid:

FRSAPSGSTKVVIHFTDGAD

Intron Amino Acid Position:

1952

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

33.6

Major BPS

62.2

0.3

1.1

68.9

Major PPT

78.4

0.64

0.8

70.1

36.5

Minor 5ss

35.2

-1.7

2.9

41.4

39.1

Minor BPS

47.9

-0

65.41

45.4

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099