Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8929958_8931352_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8929958 - 8931352

Intron Length:

1395

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTC|GTAAGTGAC

5'SS Class:

major

3'SS Sequence:

TGTTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

TTGTGTTTCCCT

Flanking Amino Acid:

DLEFELAEQLDNIAERTCCG

Intron Amino Acid Position:

2027

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.3

68.5

36.9

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

0.76

0.8

78.1

30.7

Minor 5ss

34.5

-1.8

3.2

44.1

38.2

Minor BPS

38.4

-0.8

3.7

70.68

46.8

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099