Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8931446_8931631_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8931446 - 8931631

Intron Length:

186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTGAA

U12 Branch Point Sequence:

AAGAAGTGAAAA

Flanking Amino Acid:

RGPPGPIGQKGATGDIGYRG

Intron Amino Acid Position:

2058

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.4

38.7

Major BPS

55.5

0.14

1.1

47.1

37.9

Major PPT

84.8

0.78

0.7

77.9

36.6

Minor 5ss

27.7

-2.6

34.2

Minor BPS

37.6

-0.9

2.1

43.48

37.2

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099