Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8931686_8932492_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8931686 - 8932492

Intron Length:

807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CTCCGTGCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTGCAT

U12 Branch Point Sequence:

GAGCCCTGACCA

Flanking Amino Acid:

RGYPGDEGGPGERGPPGMNG

Intron Amino Acid Position:

2076

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

77.8

Major BPS

66.2

0.4

1.4

77.4

37.3

Major PPT

66.8

0.38

0.9

59.7

35.6

Minor 5ss

29.4

-2.4

3.2

40.8

45.4

Minor BPS

48.1

-0.1

1.8

56.16

42.2

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099