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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8932565_8933170_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8932565 - 8933170

Intron Length:

606

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTAATCTCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

TCCCCCCTAATC

Flanking Amino Acid:

QGCPGHRGTKGSRGFPGEKG

Intron Amino Acid Position:

2100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

78.8

38.3

Major BPS

81.9

0.79

0.9

80.1

Major PPT

77.2

0.61

0.9

73.7

36.5

Minor 5ss

42.4

-0.8

3.1

57.3

47.4

Minor BPS

56.4

0.18

1.7

64.29

41.6

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099