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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8933365_8933463_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8933365 - 8933463

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAGTCGT

5'SS Class:

major

3'SS Sequence:

TGTTATTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

CTCTTCTAAATC

Flanking Amino Acid:

MGLDGIDGEEGDKGLPGSSG

Intron Amino Acid Position:

2124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

1.3

72.7

44.5

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

86.3

0.82

0.8

80.8

36.4

Minor 5ss

31.4

-2.1

2.9

42.4

44.2

Minor BPS

57.9

0.23

1.7

64.76

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099