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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8933715_8934225_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8933715 - 8934225

Intron Length:

511

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAACTATT

5'SS Class:

major

3'SS Sequence:

CTCTTGCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TGTTTCTCATCG

Flanking Amino Acid:

RGDRGLRGDPGDSGADNTQR

Intron Amino Acid Position:

2163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.2

82.1

37.7

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

83.2

0.75

0.8

80.3

31.8

Minor 5ss

47.7

-0.2

2.7

69.8

40.5

Minor BPS

53.6

-0

1.9

64.13

43.6

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099