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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8934292_8934863_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8934292 - 8934863

Intron Length:

572

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAAGTTT

5'SS Class:

major

3'SS Sequence:

GCTTTTCCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGATCAT

U12 Branch Point Sequence:

GGGCTCTCACCT

Flanking Amino Acid:

RGQKGEIGLMGEPGPVGPSG

Intron Amino Acid Position:

2185

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

74.6

36.1

Major BPS

0.57

1.2

41.2

Major PPT

75.4

0.57

0.8

73.9

31.3

Minor 5ss

42.2

-0.9

3.5

60.9

46.1

Minor BPS

45.8

-0.2

1.8

58.99

43.8

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099