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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8934918_8935353_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8934918 - 8935353

Intron Length:

436

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

TCTGTGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACACAT

U12 Branch Point Sequence:

CCTTGCCTAACA

Flanking Amino Acid:

SGQDGGVGRKGMAGRRGPIG

Intron Amino Acid Position:

2203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.1

37.5

Major BPS

61.1

0.28

29.8

Major PPT

79.6

0.67

0.9

72.9

37.4

Minor 5ss

37.8

-1.4

47.1

48.3

Minor BPS

52.7

0.08

2.1

67.55

44.9

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099