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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8936109_8936748_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8936109 - 8936748

Intron Length:

640

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAATCCT

5'SS Class:

major

3'SS Sequence:

CTTTTTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGCCAA

U12 Branch Point Sequence:

TTGTTGCCAACA

Flanking Amino Acid:

RGEQGVPGPRAGSGPPGTPG

Intron Amino Acid Position:

2257

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.1

68.7

42.2

Major BPS

0.07

1.4

64.5

42.8

Major PPT

87.6

0.85

0.8

80.3

37.3

Minor 5ss

35.8

-1.6

42.9

43.9

Minor BPS

44.4

-0.4

2.4

63.73

42.7

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099