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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8936812_8937083_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8936812 - 8937083

Intron Length:

272

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTCTC

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAGCAC

U12 Branch Point Sequence:

CTTGCTTGAACA

Flanking Amino Acid:

RGRIGPLGRKGEPGDPGPKG

Intron Amino Acid Position:

2278

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

77.9

36.9

Major BPS

53.4

0.08

1.4

65.7

Major PPT

92.1

0.95

0.6

91.2

20.4

Minor 5ss

44.9

-0.6

2.8

61.5

43.4

Minor BPS

62.7

0.4

1.6

71.68

40.8

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099