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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8937147_8937441_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8937147 - 8937441

Intron Length:

295

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCATTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

GCTTTCCCATTT

Flanking Amino Acid:

NGQQGPRGEMGDDGRDGIGG

Intron Amino Acid Position:

2299

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

68.8

42.2

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

80.6

0.69

0.7

78.6

28.5

Minor 5ss

40.1

-1.1

3.4

52.3

45.8

Minor BPS

43.6

-0.4

61.07

43.1

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746