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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8937493_8937784_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8937493 - 8937784

Intron Length:

292

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGTC

5'SS Class:

strong_major

3'SS Sequence:

ATGTTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCAAT

U12 Branch Point Sequence:

ATTCCAATAAAC

Flanking Amino Acid:

IGGPGPKGRKGERGFIGYPG

Intron Amino Acid Position:

2316

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

81.2

32.7

Major BPS

71.8

0.54

1.2

32.5

Major PPT

84.2

0.77

0.8

81.7

35.4

Minor 5ss

35.9

-1.6

3.5

51.5

45.7

Minor BPS

48.9

-0.1

1.9

66.69

37.5

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099