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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8937985_8938120_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8937985 - 8938120
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
GTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CACTCATGGAGA
Flanking Amino Acid:
PGPKGNRGRRGNAGDPGTPG
Intron Amino Acid Position:
2349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72.5
39.9
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
81.2
0.7
0.8
73.6
37
Minor 5ss
45.1
-0.5
2.8
54.8
43.4
Minor BPS
42.7
-0.5
2
48.89
41.7

Associated Gene:

Gene:
COL6A3
Ensembl Gene ID:
ENSAPLG00000005511
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026823
8903831 - 8952929
49099
ENSAPLT00000040566
8903831 - 8952929
49099
ENSAPLT00000005838
8903831 - 8952929
49099
ENSAPLT00000036619
8903831 - 8952929
49099
ENSAPLT00000034921
8903831 - 9126576
222746
ENSAPLT00000033606
8903831 - 8952929
49099