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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8939122_8939209_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8939122 - 8939209

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTGTA

5'SS Class:

major

3'SS Sequence:

TTATTTTCTAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TTTCATTTTATT

Flanking Amino Acid:

FKGEKGRSLSQCDLVQNIKD

Intron Amino Acid Position:

2381

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

74.4

36.1

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

77.5

0.62

79.1

33.1

Minor 5ss

38.3

-1.3

3.3

49.9

46.4

Minor BPS

55.3

0.25

1.8

78.34

37.7

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746