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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8939247_8939356_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8939247 - 8939356

Intron Length:

110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTACA

5'SS Class:

major

3'SS Sequence:

ATCTTTTCCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

TTTTCCTCCATC

Flanking Amino Acid:

DLVQNIKDKCPCCYGPKECP

Intron Amino Acid Position:

2393

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.8

0.4

1.3

38.8

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

81.3

0.7

0.8

76.3

31.7

Minor 5ss

32.4

-2

2.6

39.4

38.9

Minor BPS

62.5

0.38

78.52

37.5

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099