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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8939369_8939523_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8939369 - 8939523

Intron Length:

155

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

ATCTTTCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACACAT

U12 Branch Point Sequence:

TTGTTCCCAACA

Flanking Amino Acid:

NIKDKCPCCYGPKECPVFPT

Intron Amino Acid Position:

2397

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

74.1

36.5

Major BPS

61.1

0.28

29.8

Major PPT

76.4

0.59

73.4

36.5

Minor 5ss

34.7

-1.7

2.9

41.5

39.2

Minor BPS

55.7

0.18

1.9

72.07

39.9

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099