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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8941947_8942739_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8941947 - 8942739

Intron Length:

793

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

CAGAGTTTAATG

Flanking Amino Acid:

FGRLLPSFIRSDFAFYLSPE

Intron Amino Acid Position:

2828

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

23.6

Major BPS

81.8

0.79

1.1

34.5

Major PPT

80.5

0.69

0.7

73.4

31.6

Minor 5ss

36.8

-1.5

2.7

42.6

38.4

Minor BPS

-0.4

1.8

44.35

42.4

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099