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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8942843_8943475_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8942843 - 8943475

Intron Length:

633

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

TTTGCTCCGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAT

U12 Branch Point Sequence:

TTTGCTCCGATA

Flanking Amino Acid:

KSSGHAGHKAVYAAPNVTIS

Intron Amino Acid Position:

2862

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

1.1

74.7

41.5

Major BPS

76.2

0.65

1.1

65.7

43.2

Major PPT

69.5

0.44

Minor 5ss

39.4

-1.2

2.9

52.3

44.3

Minor BPS

-0.3

1.9

62.79

37.9

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000034921

8903831 - 9126576

222746