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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8943748_8944770_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8943748 - 8944770

Intron Length:

1023

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTGAATTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TGATTCTGAATT

Flanking Amino Acid:

AAASGRRRQEAKMSDIQITD

Intron Amino Acid Position:

2953

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

77.8

32.3

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

77.3

0.61

0.9

70.5

38.9

Minor 5ss

30.9

-2.2

3.3

46.1

Minor BPS

66.7

0.6

1.4

78.4

37.6

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034921

8903831 - 9126576

222746

ENSAPLT00000033606

8903831 - 8952929

49099

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099