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Intron Name: Anas_platyrhynchos_platyrhynchos_7_8945032_8946717_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8945032 - 8946717

Intron Length:

1686

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTACC

5'SS Class:

strong_major

3'SS Sequence:

CTGCCCTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

CTTGGCTGACCG

Flanking Amino Acid:

KVTYTGTFSTKTPAQPKVSL

Intron Amino Acid Position:

3040

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

81.6

29.9

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

70.5

0.46

0.8

61.5

34.9

Minor 5ss

38.7

-1.3

2.7

47.6

34.4

Minor BPS

-0.6

2.2

51.42

48.7

Associated Gene:

Gene:

COL6A3

Ensembl Gene ID:

ENSAPLG00000005511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026823

8903831 - 8952929

49099

ENSAPLT00000005838

8903831 - 8952929

49099

ENSAPLT00000040566

8903831 - 8952929

49099

ENSAPLT00000036619

8903831 - 8952929

49099

ENSAPLT00000033606

8903831 - 8952929

49099