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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8952758_8952888_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8952758 - 8952888
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CAACCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
TCTCCACCAACC
Flanking Amino Acid:
QKECEKVCVPGNINPGVVTT
Intron Amino Acid Position:
3139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
70
0.5
1
59.6
38.6
Major PPT
67.3
0.39
0.9
57.5
37.9
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
46.1
-0.3
2.1
62.73
42.1

Associated Gene:

Gene:
COL6A3
Ensembl Gene ID:
ENSAPLG00000005511
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036619
8903831 - 8952929
49099
ENSAPLT00000033606
8903831 - 8952929
49099
ENSAPLT00000026823
8903831 - 8952929
49099
ENSAPLT00000005838
8903831 - 8952929
49099
ENSAPLT00000040566
8903831 - 8952929
49099