About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9035431_9036558_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9035431 - 9036558
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTCCT
5'SS Class:
major
3'SS Sequence:
TATTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTGTTTTTGACT
Flanking Amino Acid:
ASFNRFIPSSEPAPVPPIPN
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
68.4
42.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.7
0.85
0.7
81.5
35.9
Minor 5ss
35.9
-1.6
3.1
51.8
44.5
Minor BPS
69.2
0.69
1.2
78.8
37.8

Associated Gene:

Gene:
COPS8
Ensembl Gene ID:
ENSAPLG00000016947
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024937
9035351 - 9042572
7222