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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9041780_9042279_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9041780 - 9042279
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
GCCTGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTAACTAAATT
Flanking Amino Acid:
LEQCETQELEAPGGIATPLV
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.1
0.57
0.9
72.5
37.7
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
53.7
0.2
1.9
73.4
43.7

Associated Gene:

Gene:
COPS8
Ensembl Gene ID:
ENSAPLG00000016947
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024937
9035351 - 9042572
7222