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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9212208_9215797_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9212208 - 9215797
Intron Length:
3590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTCTA
5'SS Class:
major
3'SS Sequence:
TTTCTTCCCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGTTCTAAAAAA
Flanking Amino Acid:
NILEDLKLLPEDIEIPIPRY
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
69.3
43.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.2
0.7
0.7
77.8
24.1
Minor 5ss
36.9
-1.5
3.3
50
46.3
Minor BPS
46.8
-0.2
2
60.84
38.8

Associated Gene:

Gene:
IQCA1
Ensembl Gene ID:
ENSAPLG00000011968
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012456
9211872 - 9302621
90750