Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9215912_9218202_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9215912 - 9218202

Intron Length:

2291

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTTC

5'SS Class:

strong_major

3'SS Sequence:

TGTGCCATTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCATTTTTATCT

Flanking Amino Acid:

ILCEAGLQTQIPVKAMTFEE

Intron Amino Acid Position:

151

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.3

32.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

62.7

0.29

1.1

61.4

39.1

Minor 5ss

48.4

-0.1

2.8

67.4

Minor BPS

62.4

0.47

1.6

75.72

41.5

Associated Gene:

Gene:

IQCA1

Ensembl Gene ID:

ENSAPLG00000011968

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012456

9211872 - 9302621

90750