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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9218392_9219084_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9218392 - 9219084
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTACAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTGTTTACAA
Flanking Amino Acid:
PDDAATRIQKVWRGYIQRKK
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
71.7
0.49
1
67.9
42.3
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
52.1
0.06
2.1
71.99
40.5

Associated Gene:

Gene:
IQCA1
Ensembl Gene ID:
ENSAPLG00000011968
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012456
9211872 - 9302621
90750