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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9253558_9271461_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9253558 - 9271461
Intron Length:
17904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
TGCCTACGACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATAATTTAATA
Flanking Amino Acid:
TIFSEKTPEQLFFFFVPPEA
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
55.3
0.12
1
48.3
39.5
Minor 5ss
36
-1.6
3.4
48.5
47.2
Minor BPS
57.9
0.24
1.5
64.87
35

Associated Gene:

Gene:
IQCA1
Ensembl Gene ID:
ENSAPLG00000011968
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012456
9211872 - 9302621
90750