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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9315542_9317758_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9315542 - 9317758
Intron Length:
2217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
CTCTCTTGGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TGAACTATAAAA
Flanking Amino Acid:
EPPSHHQPQKDSYRGSTGMD
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.6
46.7
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
65.1
0.34
1
61
40.2
Minor 5ss
41.9
-0.9
3.2
55.4
48.8
Minor BPS
48.9
-0
1.7
60.57
38.4

Associated Gene:

Gene:
ASB18
Ensembl Gene ID:
ENSAPLG00000027146
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042919
9314837 - 9326261
11425