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Intron Name: Anas_platyrhynchos_platyrhynchos_7_9353347_9389061_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9353347 - 9389061

Intron Length:

35715

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCTTT

5'SS Class:

weak_major

3'SS Sequence:

TTTGCTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAC

U12 Branch Point Sequence:

TTTTACACATTC

Flanking Amino Acid:

GHMKPSSDSTREEKERWIRA

Intron Amino Acid Position:

658

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

80.5

Major BPS

72.8

0.57

30.3

Major PPT

84.3

0.77

0.8

77.4

36.9

Minor 5ss

70.5

0.69

2.2

81.8

38.5

Minor BPS

45.1

-0.3

2.1

64.88

40.6

Associated Gene:

Gene:

AGAP1

Ensembl Gene ID:

ENSAPLG00000005893

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015849

9352387 - 9700224

347838

ENSAPLT00000006100

9352387 - 9602647

250261

ENSAPLT00000021503

9352387 - 9633936

281550