About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9397880_9439600_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9397880 - 9439600
Intron Length:
41721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
AGATCCTTAACT
Flanking Amino Acid:
KADGISGTAEEQEENFEFII
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
73.9
0.59
1
81
30.2
Major PPT
86.9
0.83
0.8
85.1
34.9
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
83.8
1.14
1
88.75
35.2

Associated Gene:

Gene:
AGAP1
Ensembl Gene ID:
ENSAPLG00000005893
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021503
9352387 - 9633936
281550
ENSAPLT00000015849
9352387 - 9700224
347838
ENSAPLT00000006100
9352387 - 9602647
250261