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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9439763_9458002_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9439763 - 9458002
Intron Length:
18240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCAAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCCCAAACT
Flanking Amino Acid:
TVIANSGISSDTGLGDSVCS
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.1
0.39
0.9
59.1
35.5
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
69
0.68
2
92.91
35.6

Associated Gene:

Gene:
AGAP1
Ensembl Gene ID:
ENSAPLG00000005893
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006100
9352387 - 9602647
250261