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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9458165_9475074_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9458165 - 9475074
Intron Length:
16910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTATGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TCTCTATTGACA
Flanking Amino Acid:
MSSLHISPNSGNVTTSTSVS
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
70.2
0.46
1
62.6
43
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
57.3
0.22
1.6
68.64
37.4

Associated Gene:

Gene:
AGAP1
Ensembl Gene ID:
ENSAPLG00000005893
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006100
9352387 - 9602647
250261