Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9487754_9524109_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9487754 - 9524109

Intron Length:

36356

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCCGA

5'SS Class:

major

3'SS Sequence:

TGTTCTCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

TAACGCTTAATC

Flanking Amino Acid:

GSGRAIPIKQGMLLKRSGKS

Intron Amino Acid Position:

303

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

61.5

44.7

Major BPS

61.3

0.28

30.6

Major PPT

86.4

0.82

0.8

80.4

31.7

Minor 5ss

43.3

-0.7

2.9

56.6

47.6

Minor BPS

58.5

0.25

1.8

66.14

39.2

Associated Gene:

Gene:

AGAP1

Ensembl Gene ID:

ENSAPLG00000005893

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006100

9352387 - 9602647

250261

ENSAPLT00000021503

9352387 - 9633936

281550

ENSAPLT00000015849

9352387 - 9700224

347838