Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9571349_9575277_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9571349 - 9575277

Intron Length:

3929

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTGCTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TATATTTTACCT

Flanking Amino Acid:

EIPMVLVGTQDAISSSNPRV

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

35.3

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

74.6

0.55

0.9

69.6

36.8

Minor 5ss

32.5

-2

3.1

33.3

41.7

Minor BPS

60.4

0.4

1.6

77.15

39.5

Associated Gene:

Gene:

AGAP1

Ensembl Gene ID:

ENSAPLG00000005893

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006100

9352387 - 9602647

250261

ENSAPLT00000021503

9352387 - 9633936

281550

ENSAPLT00000015849

9352387 - 9700224

347838