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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9594845_9602569_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9594845 - 9602569
Intron Length:
7725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCAGTTTAACT
Flanking Amino Acid:
LSRSVPELKVGIVGNLASGK
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
90.3
0.91
0.6
83.6
31.5
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
57.4
0.31
1.8
73.03
44

Associated Gene:

Gene:
AGAP1
Ensembl Gene ID:
ENSAPLG00000005893
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021503
9352387 - 9633936
281550
ENSAPLT00000015849
9352387 - 9700224
347838
ENSAPLT00000006100
9352387 - 9602647
250261