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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9602629_9700061_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9602629 - 9700061
Intron Length:
97433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTGCTTTTACA
Flanking Amino Acid:
QIREHVIAIEDAFVNSQEWT
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
66.7
0.52
1.7
78.96
37.6

Associated Gene:

Gene:
AGAP1
Ensembl Gene ID:
ENSAPLG00000005893
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015849
9352387 - 9700224
347838