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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_9789914_9793131_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9789914 - 9793131
Intron Length:
3218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
HFENMGKRGKYIRLSCDTDS
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.5
0.53
1
74.9
27.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
TRPM8
Ensembl Gene ID:
ENSAPLG00000014898
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015666
9787598 - 9821830
34233